I found this old thread that deals with the subject, but it is not clear if I can use the same installation for both boards.
http://e2e.ti.com/support/development_tools/code_composer_studio/f/81/t/135961.aspx
It seems that you can only use one license at a time and that I would need to install CCS twice in order to use both licenses. Would it be possible to create a shortcut that specifies on the command line which license to use when starting CCS?